Teaching-modules

Overview of all teaching modules

Teaching modules given by the UMCG department of Genetics

Introduction to R

• R course - day 1 - intro
  • R course - height data
  • R course - weight data
  • R course - new data
  • R course - myfirstfile

• R course - day 2 - stats
  • R course - expression data

• R course - day 3 - plotting

Practical workshops about specific topics

• GWAS - for beginners to R
• GWAS
  • Genotype files - .bed
  • Genotype files - .bim
  • Genotype files - .fam

Extra topics

• Differential gene expression

• Pathway analysis

• eQTL mapping
  • eQTL genotypes
  • eQTL gene positions
  • eQTL gene expression
  • eQTL SNP positions

• Microbiome part 1

• Microbiome part 2 (with answers)
  • Microbiome files - FASTQ demo
  • Microbiome files - phenotypes
  • Microbiome files - microbiome
    
• Single-cell
  • Single-cell files - Barcodes
  • Single-cell files - Genes
  • Single-cell files - Matrix
• Co-expression analysis